Toggle Individual Residues
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Jmol._Canvas2D (Jmol) "jmolApplet0"[x] loadClass core.package loadClass java.lang.String loadClass core.package JSmol exec jmolApplet0 start applet null Jmol JavaScript applet jmolApplet0__695739339405809__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet0__695739339405809__) nographics false nographics false headless false vwrOptions: { "name":"jmolApplet0","applet":true,"documentBase":"http://openmopac.net/manual/Individual%20JSmol%20paths/I-CH3-F/I%20-%20CH3%20-%20F%20(charges)%20IRC.html","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__695739339405809__","codePath":"http://openmopac.net/manual/Individual%20JSmol%20paths/I-CH3-F/../jsmol/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"695739339405809","bgcolor":"#B0B0B0" } setting document base to "http://openmopac.net/manual/Individual%20JSmol%20paths/I-CH3-F/I%20-%20CH3%20-%20F%20(charges)%20IRC.html" (C) 2015 Jmol Development Jmol Version: 14.4.0_2015.10.14 2015-10-14 19:01 java.vendor: Java2Script (HTML5) java.version: 2015-09-19 23:29:54 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet0 (signed) loadClass JS.ScriptManager Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor #B0B0B0 backgroundColor = "#B0B0B0" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet0__695739339405809__ ready script 1 started FileManager.getAtomSetCollectionFromFile(I - CH3 - F (charges) IRC.pdb) FileManager opening url http://openmopac.net/manual/Individual%20JSmol%20paths/I-CH3-F/I - CH3 - F (charges) IRC.pdb The Resolver thinks Pdb loadClass J.adapter.readers.pdb.PdbReader data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - 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CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - 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CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC Time for openFile(I - CH3 - F (charges) IRC.pdb): 1175 ms reading 1194 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 199 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Babel 1194 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - CH3 - F (charges) IRC data-set: G:/test/I - 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