geo_ref="../Starting model (new)/Step 4 - Optimize MTH1 Chain A plus 8OG geometry using a bias of 3 1SCF.arc.txt" geo_dat="../Starting model (new)/Step 5 - MTH1 Chain A plus 8OG Optimized with Bias=3, now optimize 5 Angstroms around 8OG without bias 1SCF.arc.txt" compare output Compare the geometries of Step 4 and Step 5, new method